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Statistical methods for hospital monitoring with R / (Record no. 626)

MARC details
000 -LEADER
fixed length control field 08993cam a2200409 i 4500
001 - CONTROL NUMBER
control field 17653257
003 - CONTROL NUMBER IDENTIFIER
control field OSt
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20190827154210.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 130227s2013 enk b 001 0 eng
010 ## - LIBRARY OF CONGRESS CONTROL NUMBER
LC control number 2013008301
020 ## - INTERNATIONAL STANDARD BOOK NUMBER
International Standard Book Number 9781118596302 (cloth)
035 ## - SYSTEM CONTROL NUMBER
System control number (DNLM)101603159
040 ## - CATALOGING SOURCE
Original cataloging agency DNLM/DLC
Transcribing agency DLC
Modifying agency DLC
Description conventions rda
042 ## - AUTHENTICATION CODE
Authentication code pcc
050 00 - LIBRARY OF CONGRESS CALL NUMBER
Classification number RA971
Item number .M635 2013
060 10 - NATIONAL LIBRARY OF MEDICINE CALL NUMBER
Classification number WX 150.1
082 00 - DEWEY DECIMAL CLASSIFICATION NUMBER
Classification number 362.110 68 MOR
Edition number 23
100 1# - MAIN ENTRY--PERSONAL NAME
Personal name Morton, Anthony Park,
Dates associated with a name 1933-
Relator term author.
245 10 - TITLE STATEMENT
Title Statistical methods for hospital monitoring with R /
Statement of responsibility, etc. Anthony Morton, Kerrie Mengersen, , Michael Whitby, Geoffrey Playford.
264 #1 - PRODUCTION, PUBLICATION, DISTRIBUTION, MANUFACTURE, AND COPYRIGHT NOTICE
Place of production, publication, distribution, manufacture Chichester, West Sussex [England] ;
-- Hoboken, NJ :
Name of producer, publisher, distributor, manufacturer John Wiley & Sons,
Date of production, publication, distribution, manufacture, or copyright notice 2013.
300 ## - PHYSICAL DESCRIPTION
Extent xxi, 404 pages ;
Dimensions 25 cm
336 ## - CONTENT TYPE
Content type term text
Source rdacontent
337 ## - MEDIA TYPE
Media type term unmediated
Source rdamedia
338 ## - CARRIER TYPE
Carrier type term volume
Source rdacarrier
490 0# - SERIES STATEMENT
Series statement Statistics in practice
504 ## - BIBLIOGRAPHY, ETC. NOTE
Bibliography, etc. note Includes bibliographical references (pages 391-398) and index.
505 ## - FORMATTED CONTENTS NOTE
Formatted contents note R Libraries x R Functions xi Preface xvi Introduction 1 0.1 Overview and rationale for this book 1 0.1.1 Motivation for the book 1 0.1.2 Why R? 2 0.1.3 Other reading for R 2 0.2 What methods are covered in the book? 3 0.3 Structure of the book 4 0.4 Using R 5 0.4.1 Entering data 6 0.4.2 Dates 8 0.4.3 Exporting data 10 0.5 Further notes 11 0.6 A brief introduction to rprogs charts and figures 11 0.6.1 What if there is no date column? 18 0.7 Appendix menus 20 0.7.1 IMenu() 20 0.7.2 CCMenu() 21 1 Introduction to analysis of binary and proportion data 24 1.1 Single proportion, samples and population 24 1.1.1 Calculating the confidence interval 26 1.1.2 Comparison with an expected rate 27 1.2 Likelihood ratio (Bayes factor) & supported range 29 1.3 Confidence intervals for a series of proportions 30 1.4 Difference between two proportions 33 1.4.1 Confidence intervals 33 1.4.2 Hypothesis test 35 1.4.3 The twoproportions function 37 1.5 Introducing a Bayesian approach 39 1.6 When the data are not just one or two independent samples 39 1.6.1 More than two independent proportions 40 1.6.2 Example 1, yearly data 40 1.6.3 Example 2, hospital data 43 1.6.4 Prop test and small samples 47 1.7 Summarising stratified proportion data 48 1.8 Stratified proportion data, differences between rates 50 1.8.1 Yearly data 52 1.8.2 Hospital data 54 1.9 Mantel-Haenszel, homogeneity and trend tests 54 1.9.1 Yearly data 56 1.9.2 Data stratified by hospital 59 1.10 Stratified rates and overdispersion 63 2 The analysis of aggregated binary data 67 2.1 Risk-adjustment 68 2.1.1 Using stratification 68 2.1.2 Using logistic regression 70 2.2 Discrimination and calibration 71 2.3 Using 2005 06 data 76 2.3.1 Displaying and analysing data from multiple institutions 77 2.3.2 Tabulations 78 2.3.3 Funnel plot and plot of multiple confidence intervals 83 2.4 When the Es are not fixed 99 2.5 Complex Surgical Site Infections 102 2.5.1 Funnel plot analysis 102 2.5.2 Shrinkage analysis 104 2.6 Complex SSI risk-adjustment discrimination 106 2.7 Appendix 1 Further tabulation methods 106 2.8 Appendix 2 SMR CIs and tests, further scripts. Hospital expected values from other hospitals in group 109 3 Sequential binary data 116 3.1 CUSUM and related charts for binary data 117 3.2 Cumulative Observed-Expected (O-E) chart and combined CUSUM and O-E chart 120 3.3 Cumulative funnel plot and combined CUSUM and funnel plot 120 3.4 Example 121 3.5 Including risk adjustment 124 3.6 CUSUM chart 125 3.7 Cumulative observed minus expected (O-E) chart 125 3.8 Funnel plot 127 3.9 Discrimination and calibration of risk adjustment 128 3.10 Shewhart P chart and EWMA chart 132 3.11 Note on the Run-sum chart 135 3.12 The EWMA chart 135 3.13 Plotting the expected values 138 3.14 Using a spline or generalised additive model (GAM) chart 139 3.15 When there are few time periods 141 3.16 Charts for quarterly data and data without a first date column 143 3.17 Charts for composite measures 146 3.18 Additional tabulations 146 3.19 The issue of under-reporting 151 3.20 New CUSUM and EWMA charts, low-rate data 151 3.20.1 The risk-adjusted Bernoulli CUSUM 153 3.20.2 The EWMA 156 3.20.3 Quarterly rates 157 3.21 Intervals between uncommon binary adverse events 159 3.22 Appendix, proposed EWMA for low rate data 164 4 Introduction to analysis of count and rate data 168 4.1 Introduction 168 4.2 Rate and count data 169 4.3 Single count or rate 169 4.3.1 Confidence interval 170 4.3.2 Significance test 171 4.4 Confidence limits for columns of counts and rates 173 4.5 Two independent rates 175 4.5.1 Confidence interval 175 4.5.2 Hypothesis test 176 4.5.3 Bayesian approach 177 4.6 Chi-squared and trend tests for count and rate data 177 4.7 Stratified count and rate data 180 4.7.1 Obtaining a summary rate 180 4.7.2 Stratified count and rate data, two sets of rates 181 4.7.3 Indirect standardisation 182 4.7.4 Direct standardisation 184 4.8 Mantel-Haenszel, homogeneity and trend tests 187 4.8.1 Fixed effects analysis, stratification by years 187 4.8.2 Random effects analysis, stratification by hospitals 190 4.9 Illustration of dealing with overdispersed rates 193 4.10 The importance of count data variation 196 4.11 Complex systems, networks and variation 201 5 Tables and charts for aggregated count data 203 5.1 Introduction, data, limitations of aggregated count data analysis 203 5.2 Confidence intervals for Staphylococcus aureus bacteraemia SMR data 206 5.3 Funnel plots for Staphylococcus aureus bacteraemia SMR data 212 5.4 Tabulations and Z-scores 219 5.5 More on overdispersion, false discovery, very small expected counts 221 5.5.1 Proposal for Benjamini-Hochberg modified funnel plot 223 5.6 Bayesian shrinkage plot 227 5.6.1 Using OpenBUGS 228 5.6.2 Using empirical Bayes methods 229 5.7 Performing further tabulations in R 231 5.8 Adjusting hospital levels for MRSA bacteraemia 234 5.9 Bacteraemia risk adjustment 237 6 Sequential count and rate data 242 6.1 Grouping data 243 6.2 Means and variances, predictability 243 6.3 Tabulations 244 6.4 Denominators 246 6.5 Shewhart, EWMA and GAM control charts without denominators 247 6.5.1 Shewhart/EWMA charts 257 6.6 Shewhart, EWMA and GAM control charts with denominators 264 6.6.1 Overdispersed data 273 6.7 Charts for quarterly data and data without a first date column 280 6.8 When there are few time periods 282 6.9 Cross-tabulation in wide format 286 6.10 Uncommon count data AEs 291 6.11 Additional scripts for tabulations and charts 297 6.12 Intervals between uncommon count data events 300 6.13 Note on calculation of negative binomial parameters for control charts when denominators vary 303 6.13.1 Simple weighted variance 303 6.13.2 Linear approximation (Bissell) 303 6.13.3 Comparison of simple weighted variance and Bissell s linear approximation 304 7 Miscellaneous AEs 307 7.1 MRO prevalence 308 7.2 Antibiotic usage 315 7.3 Spurious proportions, some blood culture data 316 7.4 RIDIT charts, ECG data 321 7.5 Numerical data theatre utilisation 326 7.6 Length of stay (LOS) data 329 7.7 Changepoint 339 7.8 Assessing agreement 346 7.8.1 Numerical data agreement 348 7.9 Making decisions (decision analysis) 350 7.10 Investigating outbreaks, further analysis of stratified data 352 7.10.1 Reviewing stratified data analysis 355 7.10.2 Outbreak investigation example 361 8 Hospital safety and adverse event prevention 374 8.1 Introduction 374 8.2 An overview of hospital quality improvement, five pillars 375 8.2.1 The Customer, the first pillar 375 8.2.2 The Practitioner, the second pillar 375 8.2.3 The System, the third and main pillar 375 8.3 Medical error 376 8.3.1 Background of medical error (Vincent, Taylor-Adams & Vincent) 376 8.4 Improving the system 377 8.4.1 Evidence-based systems 377 8.4.2 The role of bundles and checklists 377 8.5 Error-proofing systems 379 8.6 Discipline and accountability 379 8.7 Limitations of imposing quality 380 8.8 Performance and predictable variation 380 8.9 The keys to a good system 381 8.10 Analysing and implementing evidence-based systems 381 8.11 The role of patient-care staff 382 8.12 The role of central authority 382 8.13 Change management, the fourth pillar 383 8.14 Feedback loops, the fifth pillar 383 8.15 Implementation of the Quality Improvement Process 384 8.15.1 Implementation 384 8.15.2 Obtaining data 386 8.15.3 Special issues with QI studies 386 8.16 The hospital as a network 389 References 391 Index 399
650 12 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element Hospital Administration.
650 12 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element Statistics as Topic.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Mengersen, Kerrie L.,
Relator term author.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Playford, Geoffrey,
Relator term author.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Whitby, Michael,
Dates associated with a name 1950-
Relator term author.
776 08 - ADDITIONAL PHYSICAL FORM ENTRY
Relationship information Online version:
Main entry heading Morton, Anthony Park, 1933- author.
Title Statistical methods for hospital monitoring with R
Place, publisher, and date of publication Chichester, West Sussex : John Wiley & Sons Inc., 2013
International Standard Book Number 9781118639160
Record control number (DLC) 2013009332
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    Dewey Decimal Classification     12/1 All India Institute of Speech and Hearing All India Institute of Speech and Hearing 27/08/2019   362.110 68 MOR 20203 27/08/2019 27/08/2019 Stack text books